SNP Profiles of RB 37   View Data

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 Key

 1234567891011121314
_Input profile
GGAAACGGCCCCGGAACTAAGGAAACCC
1._RB_37_[BRA]
GGAAACGGCCCC_AACTAAGG_ACCC
2._RB_37_[BRA]
GGAAACGG_CC_AACTAA_AAACCC
3._RUQ_1705
__AC____AA____AA_
4._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
5._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
6._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
7._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
8._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
9._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
10._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
11._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
12._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
13._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
14._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
15._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
16._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
17._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
18._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
19._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
20._RB_37_[BRA]
GGAACCGGTTCCGGAATTAAGGAGCCCC
21._GC-01-043-2-20
GGAACCGGTTCCGGAATTAAGGAGCCCC
22._RB_37_[BRA]
GGAACCGGTT_GGAACCAAGGAGCCCC
23._GC-01-043-2-20
GGAACCGGTT_GGAACCAAGGAGCCCC
24._RB_37_[BRA]
GGAACCGGTT_GGAATTAAGGAGCCCC
25._GC-01-043-2-20
GGAACCGGTT_GGAATTAAGGAGCCCC
26._GC-01-43-2-20
GGAACCCCAACCCCAAAAAAGG_CC_
27._GC-01-43-2-20
GGAACCCCAACCCCAAAAAAGG_CC_
 1516171819202122232425262728
_Input profile
GGGGCCCCAAGGGGCTCTCGAACCAACT
1._RB_37_[BRA]
_GGCCCCAAGGGGTTCTCGAACCAACT
2._RB_37_[BRA]
GGGGCCCCAAGGGGTTCTCGAACCAACT
3._RUQ_1705
_GGCC_AAGGGG_____AA_
4._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
5._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
6._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
7._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
8._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
9._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
10._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
11._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
12._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
13._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
14._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
15._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
16._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
17._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
18._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
19._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
20._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
21._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
22._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
23._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
24._RB_37_[BRA]
GGGGACCCAAGGGGTTTTGGAACCAACC
25._GC-01-043-2-20
GGGGACCCAAGGGGTTTTGGAACCAACC
26._GC-01-43-2-20
CCCGACGG_CCCCAAAAGGAAGGAAGG
27._GC-01-43-2-20
CCCGACGG_CCCCAAAAGGAAGGAAGG
 293031323334353637383940  
_Input profile
GGAACTCTGGTTAACCCCCCAGCCX_XX_X
1._RB_37_[BRA]
GGAA_TTGGTTAACCCCCCAA_X_XX_X
2._RB_37_[BRA]
GGAA_TTGGTTAACCCTCCAACCX_XX_X
3._RUQ_1705
GG_TT_GG____CC__X_XX_X
4._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
5._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
6._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
7._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
8._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
9._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
10._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
11._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
12._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
13._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
14._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
15._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
16._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
17._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
18._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
19._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
20._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
21._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
22._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
23._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
24._RB_37_[BRA]
GGAATTCTGGTTAACTCCCCAACCX_XX_X
25._GC-01-043-2-20
GGAATTCTGGTTAACTCCCCAACCX_XX_X
26._GC-01-43-2-20
GGAA__CCAAAAAGGGGGAAGGX_XX_X
27._GC-01-43-2-20
GGAA__CCAA_AGGGGGAAGGX_XX_X

Input profile: RB_37_[BRA] RUQ_135

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._RB_37_[BRA]

95.7 %
35 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._RB_37_[BRA]

94.4 %
36 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._RB_37_[BRA] RUQ_1705

92.3 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

4._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP4
 Mars, 2018

5._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11 > FP3
 Mars, 2018

7._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

9._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 9 > FP
 Dapeng Zhang, 2016

13._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 14 > F
 Dapeng Zhang, 2016

14._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 11 > F
 Dapeng Zhang, 2016

15._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 15
 Dapeng Zhang, 2016

16._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 13
 Dapeng Zhang, 2016

17._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 10
 Dapeng Zhang, 2016

18._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 8
 Dapeng Zhang, 2016

19._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 6
 Dapeng Zhang, 2016

20._RB_37_[BRA]

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

21._RB_37_[BRA] GC-01-043-2-20

82.5 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

22._RB_37_[BRA]

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 2 > FP
 Dapeng Zhang, 2016

23._RB_37_[BRA] GC-01-043-2-20

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

24._RB_37_[BRA]

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1216 16
 Dapeng Zhang, 2016

25._RB_37_[BRA] GC-01-043-2-20

82.1 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

26._RB_37_[BRA] GC-01-43-2-20

40 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 11 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

27._RB_37_[BRA] GC-01-43-2-20

38.2 %
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 16, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1458 39TcSNP1484 40TcSNP1520